STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
myogMyogenin. (246 aa)    
Predicted Functional Partners:
fbxo25
F-box protein 25.
    
 
 0.940
mymk
Myomaker, myoblast fusion factor.
   
  
 0.892
LOC103465907
Inhibitor of DNA binding 4.
    
 
 0.806
LOC103478877
Matrix metallopeptidase 14b (membrane-inserted).
    
 
 0.801
SRF
Serum response factor.
   
 
 0.797
srf
Serum response factor b.
   
 
 0.797
fbxo32
F-box protein 32.
    
 
 0.797
mstn
Myostatin b.
   
  
 0.793
LOC103458743
Myristoylated alanine-rich protein kinase C substrate b.
      
 0.778
LOC103465574
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.764
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.