STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eipr1EARP complex and GARP complex interacting protein 1. (387 aa)    
Predicted Functional Partners:
vps51
VPS51 subunit of GARP complex.
   
 
 0.909
vps50
VPS50 EARP/GARPII complex subunit.
    
 
 0.893
vps54
VPS54 subunit of GARP complex.
    
 
 0.873
vps53
VPS53 subunit of GARP complex.
    
 
 0.869
vps52
VPS52 subunit of GARP complex.
    
 
 0.750
ccdc186
Si:ch211-225b10.4.
      
 0.645
thoc6
THO complex 6.
    
 
 0.575
trim23
Tripartite motif containing 23.
    
 
 0.558
brix1
Brix domain containing 2.
      
 0.549
cpd
Carboxypeptidase D, a.
      
 0.549
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.