STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103462729Leucine rich repeat containing 4C, genome duplicate b. (631 aa)    
Predicted Functional Partners:
ntng1
Netrin g1a.
   
 0.959
LOC103479750
Vav 3 guanine nucleotide exchange factor b.
   
 0.959
lrrc4c
Leucine rich repeat containing 4C, genome duplicate a.
  
  
 
0.901
fam151b
Family with sequence similarity 151 member B.
    
 
 0.505
epdr1
Ependymin related 1.
      
 0.468
EGFR
Receptor protein-tyrosine kinase.
   
 0.420
LOC103461563
Receptor protein-tyrosine kinase.
   
 0.420
erbb3
Protein kinase domain-containing protein.
   
 0.420
erbb4
Receptor protein-tyrosine kinase.
   
 0.420
egfr
Receptor protein-tyrosine kinase.
   
 0.420
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.