STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103477083Ventral homeobox. (243 aa)    
Predicted Functional Partners:
lef1
Lymphoid enhancer-binding factor 1.
    
  0.663
LOX
Lysyl oxidase.
    
 0.606
scai
Suppressor of cancer cell invasion.
      
 0.603
LOC103471635
Ligand of numb-protein X 2b.
    
 0.546
ENSPREP00000014094
NDK domain-containing protein.
    
   0.515
chrd
Chordin; Belongs to the chordin family.
      
 0.503
LOC103473609
POU domain protein.
  
 
 0.436
pou2f1
POU domain protein.
    
 0.417
ENSPREP00000027150
Uncharacterized protein.
    
   0.411
bmp2
Bone morphogenetic protein 2b.
    
 
 0.404
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.