STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ferd3lFer3-like bHLH transcription factor. (66 aa)    
Predicted Functional Partners:
LOC103469343
HEXIM P-TEFb complex subunit 1.
    
 
 0.815
LOC103463652
Transcription factor 3b.
    
 0.711
TCF4
Transcription factor 4.
    
 0.711
ENSPREP00000026287
Uncharacterized protein.
    
 0.711
tcf12
Transcription factor 12.
    
 0.711
GPR137B
G protein-coupled receptor 137B.
      
 0.681
LOC103466449
BHLH domain-containing protein.
    
 0.646
ssr4
Signal sequence receptor, delta.
      
 0.600
xrcc3
DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily.
      
 0.549
dgcr2
DiGeorge syndrome critical region gene 2.
      
 0.494
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (18%) [HD]