ids protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ids

Iduronate 2-sulfatase. (499 aa)

Predicted Functional Partners:

idua

0.974

sumf1

0.926

hpse

0.903

hpse2

0.900

gusb

0.824

txndc9

0.732

mrpl30

0.724

sgsh

0.691

LOC103473209

0.683

gns

0.680

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103473209	gns	ENSPREP00000022872	ENSPREP00000010021	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	0.902
LOC103473209	gusb	ENSPREP00000022872	ENSPREP00000010643	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.	0.936
LOC103473209	ids	ENSPREP00000022872	ENSPREP00000004883	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	Iduronate 2-sulfatase.	0.683
LOC103473209	sgsh	ENSPREP00000022872	ENSPREP00000000571	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	N-sulfoglucosamine sulfohydrolase (sulfamidase).	0.552
LOC103473209	sumf1	ENSPREP00000022872	ENSPREP00000022816	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	Sulfatase modifying factor 1.	0.783
gns	LOC103473209	ENSPREP00000010021	ENSPREP00000022872	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	0.902
gns	gusb	ENSPREP00000010021	ENSPREP00000010643	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.	0.936
gns	ids	ENSPREP00000010021	ENSPREP00000004883	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	Iduronate 2-sulfatase.	0.680
gns	sgsh	ENSPREP00000010021	ENSPREP00000000571	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	N-sulfoglucosamine sulfohydrolase (sulfamidase).	0.553
gns	sumf1	ENSPREP00000010021	ENSPREP00000022816	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	Sulfatase modifying factor 1.	0.791
gusb	LOC103473209	ENSPREP00000010643	ENSPREP00000022872	Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	0.936
gusb	gns	ENSPREP00000010643	ENSPREP00000010021	Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	0.936
gusb	ids	ENSPREP00000010643	ENSPREP00000004883	Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.	Iduronate 2-sulfatase.	0.824
gusb	idua	ENSPREP00000010643	ENSPREP00000029377	Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.	Iduronidase alpha-L-.	0.724
gusb	sgsh	ENSPREP00000010643	ENSPREP00000000571	Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.	N-sulfoglucosamine sulfohydrolase (sulfamidase).	0.521
hpse	hpse2	ENSPREP00000019122	ENSPREP00000029325	Heparanase.	Heparanase 2.	0.903
hpse	ids	ENSPREP00000019122	ENSPREP00000004883	Heparanase.	Iduronate 2-sulfatase.	0.903
hpse2	hpse	ENSPREP00000029325	ENSPREP00000019122	Heparanase 2.	Heparanase.	0.903
hpse2	ids	ENSPREP00000029325	ENSPREP00000004883	Heparanase 2.	Iduronate 2-sulfatase.	0.900
ids	LOC103473209	ENSPREP00000004883	ENSPREP00000022872	Iduronate 2-sulfatase.	N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.	0.683