STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1052 aa)    
Predicted Functional Partners:
LOC103467951
G patch domain and KOW motifs.
    
 0.998
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.986
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.981
ppil4
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
   
 0.981
xab2
XPA binding protein 2.
   
 0.980
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
  0.980
sf3b2
Splicing factor 3b, subunit 2.
   
 0.979
cwc27
CWC27 spliceosome associated cyclophilin.
   
 0.979
rnf113a
Ring finger protein 113A.
   
 0.968
ENSPREP00000025430
BUD13 homolog.
   
 0.965
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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