STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103480127SRY-box transcription factor 19b. (303 aa)    
Predicted Functional Partners:
LOC103473609
POU domain protein.
    
 0.906
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.724
sall4
Spalt-like transcription factor 4.
   
 0.722
LOC103474638
Bone morphogenetic protein 16.
    
 0.606
ENSPREP00000011180
Nuclear receptor subfamily 5, group A, member 2.
    
 0.588
Lin28a
CCHC-type domain-containing protein.
    
 0.564
prdm14
PR domain containing 14.
    
 0.551
ENSPREP00000013595
POU domain protein.
   
 0.538
LOC103476521
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
 0.534
LOC103482486
Homeobox domain-containing protein.
      
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.