STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem196Uncharacterized protein. (179 aa)    
Predicted Functional Partners:
sp4
Sp4 transcription factor.
      
 0.804
ENSPREP00000021544
Transmembrane protein 242.
      
 0.672
cryzl1
Crystallin, zeta (quinone reductase)-like 1.
      
 0.667
slc35f4
Solute carrier family 35 member F4.
      
 0.635
anapc13
Anaphase promoting complex subunit 13.
      
 0.604
CDC42SE2
CDC42 small effector 2.
      
 0.604
serac1
Serine active site containing 1.
      
 0.602
pxylp1
2-phosphoxylose phosphatase 1; Belongs to the histidine acid phosphatase family.
      
 0.596
tsr3
Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.592
map3k9
Mitogen-activated protein kinase kinase kinase.
      
 0.586
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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