STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103458105Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family. (533 aa)    
Predicted Functional Partners:
bet1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.978
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.976
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.974
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 0.972
stx18
Syntaxin 18.
    
 
 0.931
uso1
USO1 vesicle transport factor.
   
 0.894
LOC103479084
SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.
   
 0.876
LOC103463624
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
   
 0.876
nsf
N-ethylmaleimide-sensitive factor a.
   
 0.866
LOC103481708
N-ethylmaleimide-sensitive factor b; Belongs to the AAA ATPase family.
   
 0.866
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.