STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
anxa3Annexin. (320 aa)    
Predicted Functional Partners:
nup133
Nucleoporin 133.
      
 0.495
ENSPREP00000027150
Uncharacterized protein.
   
 
 0.471
herc4
HECT and RLD domain containing E3 ubiquitin protein ligase 4.
    
 
 0.462
manf
Mesencephalic astrocyte-derived neurotrophic factor.
     
  0.460
RDH13
Retinol dehydrogenase 13; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.433
stxbp2
Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.429
LOC103469646
Syntaxin binding protein 1b; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.429
LOC103473957
Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.429
HABP4
Hyaluronan binding protein 4.
    
  0.413
Sod3
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.409
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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