STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stau1Staufen double-stranded RNA binding protein 1. (696 aa)    
Predicted Functional Partners:
dicer1
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
    
 0.886
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
 
 0.815
LOC103479258
Uncharacterized protein.
    
 
 0.806
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.806
ilf3
Interleukin enhancer binding factor 3b.
    
 
 0.801
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
    
 
 0.799
gpatch4
G patch domain containing 4.
    
   0.783
LOC103479097
Uncharacterized protein.
    
 
 0.779
rplp0
Ribosomal protein, large, P0.
    
   0.778
nkrf
NFKB repressing factor.
    
   0.748
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.