STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vps4aVacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.995
LOC103456856
Charged multivesicular body protein 5b.
   
 0.984
chmp5
Charged multivesicular body protein 5a.
   
 0.984
chmp1a
Charged multivesicular body protein 1A.
   
 0.976
chmp1b
Chromatin modifying protein 1B.
   
 0.976
LOC103470937
Uncharacterized protein.
   
 0.976
ist1
IST1 factor associated with ESCRT-III.
   
 0.953
chmp2a
Charged multivesicular body protein 2A.
    
 0.938
chmp3
Charged multivesicular body protein 3.
   
 0.936
chmp2b
Charged multivesicular body protein 2Bb.
   
 0.917
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.