STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttc17Tetratricopeptide repeat domain 17. (1206 aa)    
Predicted Functional Partners:
api5
Apoptosis inhibitor 5.
 
    
 0.768
LOC103460357
Uncharacterized protein.
   
  
 0.761
VSIG10
Uncharacterized protein.
      
 0.691
ubfd1
Ubiquitin family domain containing 1.
      
 0.670
LOC103480754
Si:dkey-23i12.9.
      
 0.663
borcs7
BLOC-1 related complex subunit 7.
      
 0.653
kif3b
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.599
LOC103457278
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.599
tmem131
Transmembrane protein 131.
      
 0.599
shq1
SHQ1, H/ACA ribonucleoprotein assembly factor.
      
 0.577
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.