STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CERT1Ceramide transporter 1. (623 aa)    
Predicted Functional Partners:
csnk1g1
Casein kinase 1, gamma 1; Belongs to the protein kinase superfamily.
   
 0.814
LOC103468226
Casein kinase 1 gamma 2.
   
 0.814
LOC103479254
Protein kinase domain-containing protein.
   
 0.814
mospd2
Motile sperm domain containing 2.
    
 
 0.715
rangap1
RAN GTPase activating protein 1a.
    
   0.639
LOC103481999
Ran GTPase activating protein 1b.
    
   0.639
nudcd3
NudC domain containing 3.
      
 0.606
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 0.601
LOC103464667
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 0.601
stard3
StAR-related lipid transfer (START) domain containing 3.
      
 0.567
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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