STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103480126SUMO specific peptidase 3b. (550 aa)    
Predicted Functional Partners:
tex10
Testis expressed 10.
   
 0.906
wdr18
WD repeat domain 18.
    
 0.903
pelp1
Proline, glutamate and leucine rich protein 1.
    
 0.852
nol9
Nucleolar protein 9.
   
 0.851
sumo1
Small ubiquitin like modifier 1.
   
 0.842
crebzf
CREB/ATF bZIP transcription factor.
   
 0.769
ENSPREP00000008252
Uncharacterized protein.
   
 0.769
LOC103461358
Uncharacterized protein.
   
 0.769
Senp6
SUMO specific peptidase 6a.
   
 0.753
nup133
Nucleoporin 133.
   
 
 0.699
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.