STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sh3bp5lSH3-binding domain protein 5-like, a. (427 aa)    
Predicted Functional Partners:
sncaip
Synuclein, alpha interacting protein.
    
 
 0.835
telo2
TEL2, telomere maintenance 2, homolog (S. cerevisiae).
      
 0.811
CDH18
Cadherin 18; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.757
pla2g6
Phospholipase A2, group VI (cytosolic, calcium-independent).
   
  
 0.733
LOC103470516
ANTXR cell adhesion molecule 1a.
      
 0.718
RNF146
Ring finger protein 146.
    
 
 0.653
antxr2
Anthrax toxin receptor; Belongs to the ATR family.
      
 0.527
LOC103457724
Ring finger protein 146.
    
 
 0.508
LOC103463721
RAB11B, member RAS oncogene family, b.
    
 
 0.505
LOC103463719
RAB11B, member RAS oncogene family, a.
    
 
 0.505
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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