STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103458107EH-domain containing 4; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (546 aa)    
Predicted Functional Partners:
rbsn
Rabenosyn, RAB effector.
    
 0.864
snap29
Synaptosome associated protein 29.
    
 
 0.687
ENSPREP00000000182
Calponin-homology (CH) domain-containing protein.
    
 
 0.608
vps45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.600
ankfy1
Ankyrin repeat and FYVE domain containing 1.
    
 
 0.594
pdcd6ip
Programmed cell death 6 interacting protein.
   
 
 0.523
LOC103477863
RAB5A, member RAS oncogene family, b.
     
 0.485
ENSPREP00000009603
RAB5A, member RAS oncogene family, a.
     
 0.485
rab5c
RAB5C, member RAS oncogene family.
     
 0.485
LOC103481860
RAB5B, member RAS oncogene family.
     
 0.485
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.