Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl1Mitochondrial ribosomal protein L1. (351 aa)    
Predicted Functional Partners:
mrpl4
Mitochondrial ribosomal protein L4.
  
 0.991
mrpl12
Mitochondrial ribosomal protein L12.
  
 
 0.989
mrpl13
Mitochondrial ribosomal protein L13.
  
 0.989
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.988
ENSPREP00000014653
Mitochondrial ribosomal protein L39.
   
 
 0.987
mrpl52
Mitochondrial ribosomal protein L52.
   
 
 0.985
mrpl11
Mitochondrial ribosomal protein L11.
  
 0.984
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.983
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
  
 0.981
mrps30
Mitochondrial ribosomal protein S30.
   
 
 0.981
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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