STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467688Tumor necrosis factor receptor superfamily, member 9a. (223 aa)    
Predicted Functional Partners:
LOC103469572
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 
 0.780
LOC103473816
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 
 0.780
LOC103473320
TNF receptor-associated factor.
   
 
 0.780
tbccd1
TBCC domain containing 1.
      
 0.758
LOC103465012
Ig-like domain-containing protein.
      
 0.726
LOC103457799
Uncharacterized protein.
      
 0.725
gins1
GINS complex subunit 1 (Psf1 homolog).
      
 0.712
icmt
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.670
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
      
 0.651
crtam
Uncharacterized protein.
   
  
 0.639
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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