STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000005063Uncharacterized protein. (468 aa)    
Predicted Functional Partners:
ENSPREP00000021838
Uncharacterized protein.
 
 
 0.941
fjx1
Four-jointed box kinase 1.
   
 
 0.803
LOC103470384
Limb and CNS expressed 1.
   
 0.655
lix1l
Limb and CNS expressed 1 like.
   
 0.655
ENSPREP00000021715
Uncharacterized protein.
  
 
0.527
LOC103464624
Arginine-glutamic acid dipeptide (RE) repeats b.
    
 0.522
LOC103477989
Atrophin 1.
    
 0.522
rere
Arginine-glutamic acid dipeptide (RE) repeats a.
    
 0.522
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.461
LOC103465321
Junction plakoglobin a.
    
 0.457
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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