LOC103464556 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103464556

Uncharacterized protein. (1113 aa)

Predicted Functional Partners:

ENSPREP00000015831

0.661

ENSPREP00000015870

0.661

ENSPREP00000015917

0.661

itsn2

0.661

nckipsd

0.537

CDC42

0.515

LOC103465423

0.515

ddx43

0.514

LOC103460570

0.487

gas7

0.487

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSPREP00000015831	ENSPREP00000005959	ENSPREP00000015831	Cell division cycle 42.	Uncharacterized protein.	0.804
CDC42	ENSPREP00000015870	ENSPREP00000005959	ENSPREP00000015870	Cell division cycle 42.	Uncharacterized protein.	0.804
CDC42	ENSPREP00000015917	ENSPREP00000005959	ENSPREP00000015917	Cell division cycle 42.	EH domain-containing protein.	0.804
CDC42	LOC103464556	ENSPREP00000005959	ENSPREP00000005064	Cell division cycle 42.	Uncharacterized protein.	0.515
CDC42	itsn2	ENSPREP00000005959	ENSPREP00000017512	Cell division cycle 42.	Intersectin 2a.	0.804
CDC42	nckipsd	ENSPREP00000005959	ENSPREP00000008037	Cell division cycle 42.	NCK interacting protein with SH3 domain.	0.604
ENSPREP00000015831	CDC42	ENSPREP00000015831	ENSPREP00000005959	Uncharacterized protein.	Cell division cycle 42.	0.804
ENSPREP00000015831	ENSPREP00000015870	ENSPREP00000015831	ENSPREP00000015870	Uncharacterized protein.	Uncharacterized protein.	0.983
ENSPREP00000015831	ENSPREP00000015917	ENSPREP00000015831	ENSPREP00000015917	Uncharacterized protein.	EH domain-containing protein.	0.842
ENSPREP00000015831	LOC103460570	ENSPREP00000015831	ENSPREP00000004683	Uncharacterized protein.	Growth arrest-specific 7a.	0.976
ENSPREP00000015831	LOC103464556	ENSPREP00000015831	ENSPREP00000005064	Uncharacterized protein.	Uncharacterized protein.	0.661
ENSPREP00000015831	LOC103465423	ENSPREP00000015831	ENSPREP00000026666	Uncharacterized protein.	Cell division cycle 42.	0.804
ENSPREP00000015831	gas7	ENSPREP00000015831	ENSPREP00000026579	Uncharacterized protein.	Growth arrest specific 7.	0.976
ENSPREP00000015831	itsn2	ENSPREP00000015831	ENSPREP00000017512	Uncharacterized protein.	Intersectin 2a.	0.842
ENSPREP00000015831	nckipsd	ENSPREP00000015831	ENSPREP00000008037	Uncharacterized protein.	NCK interacting protein with SH3 domain.	0.783
ENSPREP00000015870	CDC42	ENSPREP00000015870	ENSPREP00000005959	Uncharacterized protein.	Cell division cycle 42.	0.804
ENSPREP00000015870	ENSPREP00000015831	ENSPREP00000015870	ENSPREP00000015831	Uncharacterized protein.	Uncharacterized protein.	0.983
ENSPREP00000015870	ENSPREP00000015917	ENSPREP00000015870	ENSPREP00000015917	Uncharacterized protein.	EH domain-containing protein.	0.842
ENSPREP00000015870	LOC103460570	ENSPREP00000015870	ENSPREP00000004683	Uncharacterized protein.	Growth arrest-specific 7a.	0.976
ENSPREP00000015870	LOC103464556	ENSPREP00000015870	ENSPREP00000005064	Uncharacterized protein.	Uncharacterized protein.	0.661