rbm22 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rbm22

RNA binding motif protein 22. (426 aa)

Predicted Functional Partners:

xab2

0.999

crnkl1

0.999

aqr

0.998

bud31

0.998

ppie

0.997

LOC103460347

0.997

snw1

0.997

syf2

0.986

cdc40

0.983

plrg1

0.977

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103460347	aqr	ENSPREP00000022403	ENSPREP00000010608	ISY1 splicing factor homolog.	Aquarius intron-binding spliceosomal factor.	0.998
LOC103460347	bud31	ENSPREP00000022403	ENSPREP00000026818	ISY1 splicing factor homolog.	BUD31 homolog.	0.998
LOC103460347	cdc40	ENSPREP00000022403	ENSPREP00000003161	ISY1 splicing factor homolog.	Cell division cycle 40 homolog (S. cerevisiae).	0.979
LOC103460347	crnkl1	ENSPREP00000022403	ENSPREP00000018631	ISY1 splicing factor homolog.	Crooked neck pre-mRNA splicing factor 1.	0.998
LOC103460347	plrg1	ENSPREP00000022403	ENSPREP00000000070	ISY1 splicing factor homolog.	Pleiotropic regulator 1.	0.925
LOC103460347	ppie	ENSPREP00000022403	ENSPREP00000002091	ISY1 splicing factor homolog.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.995
LOC103460347	rbm22	ENSPREP00000022403	ENSPREP00000005089	ISY1 splicing factor homolog.	RNA binding motif protein 22.	0.997
LOC103460347	snw1	ENSPREP00000022403	ENSPREP00000027074	ISY1 splicing factor homolog.	SNW domain containing 1.	0.993
LOC103460347	syf2	ENSPREP00000022403	ENSPREP00000004254	ISY1 splicing factor homolog.	SYF2 pre-mRNA-splicing factor.	0.964
LOC103460347	xab2	ENSPREP00000022403	ENSPREP00000008611	ISY1 splicing factor homolog.	XPA binding protein 2.	0.998
aqr	LOC103460347	ENSPREP00000010608	ENSPREP00000022403	Aquarius intron-binding spliceosomal factor.	ISY1 splicing factor homolog.	0.998
aqr	bud31	ENSPREP00000010608	ENSPREP00000026818	Aquarius intron-binding spliceosomal factor.	BUD31 homolog.	0.997
aqr	cdc40	ENSPREP00000010608	ENSPREP00000003161	Aquarius intron-binding spliceosomal factor.	Cell division cycle 40 homolog (S. cerevisiae).	0.973
aqr	crnkl1	ENSPREP00000010608	ENSPREP00000018631	Aquarius intron-binding spliceosomal factor.	Crooked neck pre-mRNA splicing factor 1.	0.999
aqr	plrg1	ENSPREP00000010608	ENSPREP00000000070	Aquarius intron-binding spliceosomal factor.	Pleiotropic regulator 1.	0.971
aqr	ppie	ENSPREP00000010608	ENSPREP00000002091	Aquarius intron-binding spliceosomal factor.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.998
aqr	rbm22	ENSPREP00000010608	ENSPREP00000005089	Aquarius intron-binding spliceosomal factor.	RNA binding motif protein 22.	0.998
aqr	snw1	ENSPREP00000010608	ENSPREP00000027074	Aquarius intron-binding spliceosomal factor.	SNW domain containing 1.	0.998
aqr	syf2	ENSPREP00000010608	ENSPREP00000004254	Aquarius intron-binding spliceosomal factor.	SYF2 pre-mRNA-splicing factor.	0.971
aqr	xab2	ENSPREP00000010608	ENSPREP00000008611	Aquarius intron-binding spliceosomal factor.	XPA binding protein 2.	0.999