STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479586Pre-B-cell leukemia homeobox 1a. (428 aa)    
Predicted Functional Partners:
sirt1
Sirtuin 1.
     
  0.900
pbx1
Homeobox domain-containing protein.
  
  
 
0.900
hoxa1
Homeobox A1a.
    
 0.778
LOC103461585
Homeobox domain-containing protein.
    
 0.774
LOC103468202
Homeobox B1a.
    
 0.769
meis1
Meis homeobox 1 b.
   
 0.765
meis2
Meis homeobox 2a.
   
 0.765
LOC103468207
Homeobox domain-containing protein.
    
 0.729
HOXB6
Homeobox B6.
    
 0.729
hoxc9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
    
 
 0.726
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.