STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pgap6Transmembrane protein 8A. (754 aa)    
Predicted Functional Partners:
LOC103462159
Immunoglobulin superfamily, DCC subclass, member 4.
      
 0.597
ttll4
Tubulin tyrosine ligase-like family, member 4.
      
 0.578
atp1b4
Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.
    
   0.565
cfdp1
Craniofacial development protein 1; May play a role during embryogenesis.
      
 0.527
tmem50a
Transmembrane protein 50A.
      
 0.503
LOC103468180
Zgc:158803.
      
 0.474
Luc7l
LUC7-like (S. cerevisiae).
      
 0.474
usp38
Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family.
      
 0.460
acer1
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
      
 0.430
timm17b
Translocase of inner mitochondrial membrane 17 homolog B (yeast).
      
 0.428
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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