STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103461226Trimethyllysine hydroxylase, epsilon. (407 aa)    
Predicted Functional Partners:
aifm2
Apoptosis inducing factor mitochondria associated 2.
      
 0.670
CDKAL1
CDK5 regulatory subunit associated protein 1 like 1.
      
 0.659
cryl1
Crystallin, lambda 1.
  
 
 0.563
dennd10
DENN domain containing 10.
   
  
 0.563
hadh
Hydroxyacyl-CoA dehydrogenase.
  
 
 0.563
SPRY3
Sprouty RTK signaling antagonist 3.
      
 0.549
LOC103468992
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.532
LOC103459585
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.532
slc25a43
Solute carrier family 25 member 43; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.514
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
   
 
 0.509
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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