STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000005143Laminin N-terminal domain-containing protein. (372 aa)    
Predicted Functional Partners:
LOC103466132
CD44 molecule (Indian blood group) b.
     
  0.900
ENSPREP00000014846
Uncharacterized protein.
 
  
  0.845
lama5
Laminin, alpha 5.
 
  
  0.685
itga1
Integrin, alpha 1; Belongs to the integrin alpha chain family.
    
  0.651
itga4
Integrin alpha 4; Belongs to the integrin alpha chain family.
    
  0.651
itga6
Integrin, alpha 6a; Belongs to the integrin alpha chain family.
    
  0.651
LOC103465763
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
  0.651
itga11
Integrin, alpha 11a; Belongs to the integrin alpha chain family.
    
  0.651
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
    
  0.651
itga2
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
    
  0.651
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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