STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox5SRY-box transcription factor 5. (807 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.668
LOC103462437
SRY-box transcription factor 6.
  
 
 
0.635
LOC103465716
HMG box domain-containing protein.
  
 
 
0.633
sox13
SRY-box transcription factor 13.
    
 
0.623
pax9
Paired box 9.
      
 0.594
tcf7
Transcription factor 7.
     
0.585
zbtb20
Zinc finger and BTB domain containing 20.
    
 
 0.580
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.575
cep85
Centrosomal protein 85.
    
 
 0.558
prdm16
Si:ch211-263k4.2.
    
 
 0.558
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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