STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sox5SRY-box transcription factor 5. (807 aa)    
Predicted Functional Partners:
LOC103465716
HMG box domain-containing protein.
   
 
 0.952
LOC103462437
SRY-box transcription factor 6.
   
 
 0.952
cep85
Centrosomal protein 85.
    
   0.944
sox13
SRY-box transcription factor 13.
    
 
 0.924
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.735
LOC103478979
Short stature homeobox.
    
 
 0.730
LOC103470539
AT rich interactive domain 5A (MRF1-like).
    
 
 0.717
spef2
Calponin-homology (CH) domain-containing protein.
    
 
 0.710
sox4
Transcription factor SOX.
   
0.683
ENSPREP00000025595
Transcription factor SOX.
   
0.681
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.