STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466314Uncharacterized protein. (1464 aa)    
Predicted Functional Partners:
Unc79
Uncharacterized protein.
   
 0.989
wdr35
WD repeat-containing protein 35.
    
 0.661
IFT122
Intraflagellar transport 122.
   
 0.651
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 0.636
wdr19
WD repeat domain 19.
    
 0.630
IFT43
Intraflagellar transport 43.
    
 0.444
cacnb4
Calcium channel, voltage-dependent, beta 4a subunit.
   
 0.420
LOC103467623
Calcium channel, voltage-dependent, beta 3a.
   
 0.420
cacnb2
Calcium channel, voltage-dependent, beta 2a.
   
 0.420
cacnb1
Calcium channel, voltage-dependent, beta 1 subunit.
   
 0.420
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.