tex261 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tex261

Testis expressed 261. (208 aa)

Predicted Functional Partners:

ergic3

0.544

ENSPREP00000027744

0.526

tmed10

0.503

tpt1

0.482

LOC103466072

0.451

LOC103459111

0.451

cnih1

0.436

cnih4

0.436

surf4

0.424

plcg2

0.405

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000027744	tex261	ENSPREP00000027744	ENSPREP00000005240	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Testis expressed 261.	0.526
LOC103459111	ergic3	ENSPREP00000032698	ENSPREP00000030875	Uncharacterized protein.	ERGIC and golgi 3.	0.945
LOC103459111	surf4	ENSPREP00000032698	ENSPREP00000022710	Uncharacterized protein.	Surfeit 4.	0.806
LOC103459111	tex261	ENSPREP00000032698	ENSPREP00000005240	Uncharacterized protein.	Testis expressed 261.	0.451
LOC103459111	tmed10	ENSPREP00000032698	ENSPREP00000028846	Uncharacterized protein.	Transmembrane p24 trafficking protein 10.	0.687
LOC103466072	ergic3	ENSPREP00000024713	ENSPREP00000030875	ERGIC and golgi 2.	ERGIC and golgi 3.	0.945
LOC103466072	surf4	ENSPREP00000024713	ENSPREP00000022710	ERGIC and golgi 2.	Surfeit 4.	0.806
LOC103466072	tex261	ENSPREP00000024713	ENSPREP00000005240	ERGIC and golgi 2.	Testis expressed 261.	0.451
LOC103466072	tmed10	ENSPREP00000024713	ENSPREP00000028846	ERGIC and golgi 2.	Transmembrane p24 trafficking protein 10.	0.687
cnih1	ergic3	ENSPREP00000026651	ENSPREP00000030875	Cornichon family AMPA receptor auxiliary protein 1.	ERGIC and golgi 3.	0.435
cnih1	surf4	ENSPREP00000026651	ENSPREP00000022710	Cornichon family AMPA receptor auxiliary protein 1.	Surfeit 4.	0.522
cnih1	tex261	ENSPREP00000026651	ENSPREP00000005240	Cornichon family AMPA receptor auxiliary protein 1.	Testis expressed 261.	0.436
cnih1	tmed10	ENSPREP00000026651	ENSPREP00000028846	Cornichon family AMPA receptor auxiliary protein 1.	Transmembrane p24 trafficking protein 10.	0.911
cnih4	ergic3	ENSPREP00000027252	ENSPREP00000030875	Cornichon family AMPA receptor auxiliary protein 4.	ERGIC and golgi 3.	0.435
cnih4	surf4	ENSPREP00000027252	ENSPREP00000022710	Cornichon family AMPA receptor auxiliary protein 4.	Surfeit 4.	0.443
cnih4	tex261	ENSPREP00000027252	ENSPREP00000005240	Cornichon family AMPA receptor auxiliary protein 4.	Testis expressed 261.	0.436
cnih4	tmed10	ENSPREP00000027252	ENSPREP00000028846	Cornichon family AMPA receptor auxiliary protein 4.	Transmembrane p24 trafficking protein 10.	0.902
ergic3	LOC103459111	ENSPREP00000030875	ENSPREP00000032698	ERGIC and golgi 3.	Uncharacterized protein.	0.945
ergic3	LOC103466072	ENSPREP00000030875	ENSPREP00000024713	ERGIC and golgi 3.	ERGIC and golgi 2.	0.945
ergic3	cnih1	ENSPREP00000030875	ENSPREP00000026651	ERGIC and golgi 3.	Cornichon family AMPA receptor auxiliary protein 1.	0.435