alyref protein (Poecilia reticulata) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

alyref

RRM domain-containing protein. (247 aa)

Predicted Functional Partners:

thoc2

0.996

thoc1

0.995

thoc3

0.995

eif4a3

0.964

rbm8a

0.956

thoc5

0.954

nxf1

0.953

thoc7

0.948

chtop

0.947

NCBP1

0.945

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCBP1	alyref	ENSPREP00000008871	ENSPREP00000005244	Nuclear cap binding protein subunit 1.	RRM domain-containing protein.	0.945
NCBP1	chtop	ENSPREP00000008871	ENSPREP00000029830	Nuclear cap binding protein subunit 1.	Chromatin target of PRMT1a.	0.696
NCBP1	eif4a3	ENSPREP00000008871	ENSPREP00000008805	Nuclear cap binding protein subunit 1.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.959
NCBP1	nxf1	ENSPREP00000008871	ENSPREP00000022675	Nuclear cap binding protein subunit 1.	Zgc:153681.	0.982
NCBP1	rbm8a	ENSPREP00000008871	ENSPREP00000026004	Nuclear cap binding protein subunit 1.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.852
NCBP1	thoc1	ENSPREP00000008871	ENSPREP00000009860	Nuclear cap binding protein subunit 1.	THO complex 1.	0.945
NCBP1	thoc2	ENSPREP00000008871	ENSPREP00000032098	Nuclear cap binding protein subunit 1.	THO complex 2.	0.977
NCBP1	thoc3	ENSPREP00000008871	ENSPREP00000022082	Nuclear cap binding protein subunit 1.	THO complex 3.	0.917
NCBP1	thoc5	ENSPREP00000008871	ENSPREP00000002544	Nuclear cap binding protein subunit 1.	THO complex 5.	0.870
NCBP1	thoc7	ENSPREP00000008871	ENSPREP00000027753	Nuclear cap binding protein subunit 1.	THO complex 7.	0.808
alyref	NCBP1	ENSPREP00000005244	ENSPREP00000008871	RRM domain-containing protein.	Nuclear cap binding protein subunit 1.	0.945
alyref	chtop	ENSPREP00000005244	ENSPREP00000029830	RRM domain-containing protein.	Chromatin target of PRMT1a.	0.947
alyref	eif4a3	ENSPREP00000005244	ENSPREP00000008805	RRM domain-containing protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.964
alyref	nxf1	ENSPREP00000005244	ENSPREP00000022675	RRM domain-containing protein.	Zgc:153681.	0.953
alyref	rbm8a	ENSPREP00000005244	ENSPREP00000026004	RRM domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.956
alyref	thoc1	ENSPREP00000005244	ENSPREP00000009860	RRM domain-containing protein.	THO complex 1.	0.995
alyref	thoc2	ENSPREP00000005244	ENSPREP00000032098	RRM domain-containing protein.	THO complex 2.	0.996
alyref	thoc3	ENSPREP00000005244	ENSPREP00000022082	RRM domain-containing protein.	THO complex 3.	0.995
alyref	thoc5	ENSPREP00000005244	ENSPREP00000002544	RRM domain-containing protein.	THO complex 5.	0.954
alyref	thoc7	ENSPREP00000005244	ENSPREP00000027753	RRM domain-containing protein.	THO complex 7.	0.948