STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (483 aa)    
Predicted Functional Partners:
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 0.999
fbl
Fibrillarin.
   
 0.999
nop56
NOP56 ribonucleoprotein homolog.
   
 0.998
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.996
utp4
UTP4 small subunit processome component.
   
 0.995
bysl
Bystin-like.
   
 
 0.993
wdr43
WD repeat domain 43.
   
 0.993
utp15
UTP15 small subunit processome component.
  
0.993
LOC103473717
PWP2 small subunit processome component.
   
 0.993
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.992
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.