STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (483 aa)    
Predicted Functional Partners:
bysl
Bystin-like.
   
 
 0.999
utp15
UTP15 small subunit processome component.
  
0.999
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 0.999
LOC103473717
PWP2 small subunit processome component.
   
 
0.999
fbl
Fibrillarin.
   
 0.999
utp4
UTP4 small subunit processome component.
   
 0.999
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.999
nop56
NOP56 ribonucleoprotein homolog.
   
 0.999
nol6
Nucleolar protein 6.
   
 0.998
wdr43
WD repeat domain 43.
   
0.998
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.