baz1a protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

baz1a

Bromodomain adjacent to zinc finger domain, 1A. (1068 aa)

Predicted Functional Partners:

smarca5

0.991

pole3

0.956

chrac1

0.896

chd1l

0.709

hells

0.709

mybbp1a

0.652

ercc6

0.624

sf3b1

0.612

LOC103481180

0.599

dek

0.596

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103481180	baz1a	ENSPREP00000030213	ENSPREP00000005317	Bromo domain-containing protein.	Bromodomain adjacent to zinc finger domain, 1A.	0.599
LOC103481180	chd1l	ENSPREP00000030213	ENSPREP00000026478	Bromo domain-containing protein.	Chromodomain helicase DNA binding protein 1-like.	0.717
LOC103481180	dek	ENSPREP00000030213	ENSPREP00000022622	Bromo domain-containing protein.	DEK_C domain-containing protein.	0.482
LOC103481180	ercc6	ENSPREP00000030213	ENSPREP00000031633	Bromo domain-containing protein.	Excision repair cross-complementation group 6.	0.613
LOC103481180	hells	ENSPREP00000030213	ENSPREP00000030052	Bromo domain-containing protein.	Helicase, lymphoid specific.	0.721
LOC103481180	mybbp1a	ENSPREP00000030213	ENSPREP00000025192	Bromo domain-containing protein.	MYB binding protein (P160) 1a.	0.480
LOC103481180	sf3b1	ENSPREP00000030213	ENSPREP00000029090	Bromo domain-containing protein.	Splicing factor 3b, subunit 1.	0.523
LOC103481180	smarca5	ENSPREP00000030213	ENSPREP00000034336	Bromo domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.962
baz1a	LOC103481180	ENSPREP00000005317	ENSPREP00000030213	Bromodomain adjacent to zinc finger domain, 1A.	Bromo domain-containing protein.	0.599
baz1a	chd1l	ENSPREP00000005317	ENSPREP00000026478	Bromodomain adjacent to zinc finger domain, 1A.	Chromodomain helicase DNA binding protein 1-like.	0.709
baz1a	chrac1	ENSPREP00000005317	ENSPREP00000011353	Bromodomain adjacent to zinc finger domain, 1A.	Chromatin accessibility complex subunit 1.	0.896
baz1a	dek	ENSPREP00000005317	ENSPREP00000022622	Bromodomain adjacent to zinc finger domain, 1A.	DEK_C domain-containing protein.	0.596
baz1a	ercc6	ENSPREP00000005317	ENSPREP00000031633	Bromodomain adjacent to zinc finger domain, 1A.	Excision repair cross-complementation group 6.	0.624
baz1a	hells	ENSPREP00000005317	ENSPREP00000030052	Bromodomain adjacent to zinc finger domain, 1A.	Helicase, lymphoid specific.	0.709
baz1a	mybbp1a	ENSPREP00000005317	ENSPREP00000025192	Bromodomain adjacent to zinc finger domain, 1A.	MYB binding protein (P160) 1a.	0.652
baz1a	pole3	ENSPREP00000005317	ENSPREP00000013485	Bromodomain adjacent to zinc finger domain, 1A.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.956
baz1a	sf3b1	ENSPREP00000005317	ENSPREP00000029090	Bromodomain adjacent to zinc finger domain, 1A.	Splicing factor 3b, subunit 1.	0.612
baz1a	smarca5	ENSPREP00000005317	ENSPREP00000034336	Bromodomain adjacent to zinc finger domain, 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.991
chd1l	LOC103481180	ENSPREP00000026478	ENSPREP00000030213	Chromodomain helicase DNA binding protein 1-like.	Bromo domain-containing protein.	0.717
chd1l	baz1a	ENSPREP00000026478	ENSPREP00000005317	Chromodomain helicase DNA binding protein 1-like.	Bromodomain adjacent to zinc finger domain, 1A.	0.709