STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nup160Nucleoporin 160. (1398 aa)    
Predicted Functional Partners:
nup85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.999
nup98
Nucleoporin 98.
   
 0.999
nup37
Nucleoporin 37.
   
 0.999
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.999
nup43
Nucleoporin 43.
    
 0.999
nup133
Nucleoporin 133.
   
 0.999
ahctf1
AT hook containing transcription factor 1.
   
 0.998
ENSPREP00000032333
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.998
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
   
 0.996
nup155
Nucleoporin 155.
   
 0.995
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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