STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtn4ip1Reticulon 4 interacting protein 1. (413 aa)    
Predicted Functional Partners:
ENSPREP00000004733
Uncharacterized protein.
    
   0.764
zyx
Zyxin.
    
   0.764
ENSPREP00000030871
Uncharacterized protein.
   
  
 0.762
acadm
Acyl-CoA dehydrogenase medium chain.
  
 0.748
ENSPREP00000005699
Transmembrane protein 126A.
   
  
 0.729
nup98
Nucleoporin 98.
   
  
 0.608
hsdl2
Hydroxysteroid dehydrogenase like 2.
  
 0.604
ca7
Carbonic anhydrase VII; Belongs to the alpha-carbonic anhydrase family.
      
 0.603
clg6h12orf4
Zgc:154077.
   
   0.596
aldh5a1
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.584
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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