slc37a4 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

slc37a4

Solute carrier family 37 member 4a. (429 aa)

Predicted Functional Partners:

LOC103473682

0.681

rhbdl3

0.681

rnf26

0.681

rps25

0.658

LOC103466662

0.633

api5

0.566

slc20a2

0.549

LOC103470613

0.529

LOC103468415

0.476

LOC103468418

0.476

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103466662	LOC103473682	ENSPREP00000008818	ENSPREP00000015412	Tetraspanin.	Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.	0.472
LOC103466662	rhbdl3	ENSPREP00000008818	ENSPREP00000023368	Tetraspanin.	Rhomboid-related protein 3; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	0.403
LOC103466662	slc37a4	ENSPREP00000008818	ENSPREP00000005405	Tetraspanin.	Solute carrier family 37 member 4a.	0.633
LOC103468415	slc37a4	ENSPREP00000023910	ENSPREP00000005405	Tetraspanin.	Solute carrier family 37 member 4a.	0.476
LOC103468418	slc37a4	ENSPREP00000023947	ENSPREP00000005405	Tetraspanin.	Solute carrier family 37 member 4a.	0.476
LOC103470613	slc37a4	ENSPREP00000015931	ENSPREP00000005405	Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.	Solute carrier family 37 member 4a.	0.529
LOC103473682	LOC103466662	ENSPREP00000015412	ENSPREP00000008818	Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.	Tetraspanin.	0.472
LOC103473682	rhbdl3	ENSPREP00000015412	ENSPREP00000023368	Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.	Rhomboid-related protein 3; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	0.550
LOC103473682	slc37a4	ENSPREP00000015412	ENSPREP00000005405	Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.	Solute carrier family 37 member 4a.	0.681
api5	rhbdl3	ENSPREP00000007975	ENSPREP00000023368	Apoptosis inhibitor 5.	Rhomboid-related protein 3; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	0.647
api5	slc37a4	ENSPREP00000007975	ENSPREP00000005405	Apoptosis inhibitor 5.	Solute carrier family 37 member 4a.	0.566
rhbdl3	LOC103466662	ENSPREP00000023368	ENSPREP00000008818	Rhomboid-related protein 3; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	Tetraspanin.	0.403
rhbdl3	LOC103473682	ENSPREP00000023368	ENSPREP00000015412	Rhomboid-related protein 3; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.	0.550
rhbdl3	api5	ENSPREP00000023368	ENSPREP00000007975	Rhomboid-related protein 3; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	Apoptosis inhibitor 5.	0.647
rhbdl3	slc37a4	ENSPREP00000023368	ENSPREP00000005405	Rhomboid-related protein 3; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	Solute carrier family 37 member 4a.	0.681
rnf26	rps25	ENSPREP00000032746	ENSPREP00000005355	Ring finger protein 26.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.681
rnf26	slc37a4	ENSPREP00000032746	ENSPREP00000005405	Ring finger protein 26.	Solute carrier family 37 member 4a.	0.681
rps25	rnf26	ENSPREP00000005355	ENSPREP00000032746	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Ring finger protein 26.	0.681
rps25	slc37a4	ENSPREP00000005355	ENSPREP00000005405	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Solute carrier family 37 member 4a.	0.658
slc20a2	slc37a4	ENSPREP00000013862	ENSPREP00000005405	Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.	Solute carrier family 37 member 4a.	0.549