abcg5 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

abcg5

ATP-binding cassette, sub-family G (WHITE), member 5. (608 aa)

Predicted Functional Partners:

abcg8

0.999

abcf2

0.797

LOC103462236

0.785

LOC103475277

0.785

ENSPREP00000002302

0.785

LOC103480848

0.785

abcg4

0.785

hmgcr

0.659

nr1h3

0.637

LOC103479245

0.636

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000002302	abcg5	ENSPREP00000002302	ENSPREP00000005423	ATP-binding cassette, sub-family G (WHITE), member 2d.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.785
LOC103462236	LOC103480848	ENSPREP00000000030	ENSPREP00000003335	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP-binding cassette, sub-family G (WHITE), member 2a.	0.909
LOC103462236	abcg5	ENSPREP00000000030	ENSPREP00000005423	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.785
LOC103475277	LOC103479245	ENSPREP00000001660	ENSPREP00000016313	ATP-binding cassette, sub-family G (WHITE), member 1.	Xenotropic and polytropic retrovirus receptor 1b.	0.415
LOC103475277	abcg5	ENSPREP00000001660	ENSPREP00000005423	ATP-binding cassette, sub-family G (WHITE), member 1.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.785
LOC103475277	nr1h3	ENSPREP00000001660	ENSPREP00000006124	ATP-binding cassette, sub-family G (WHITE), member 1.	Nuclear receptor subfamily 1, group H, member 3.	0.785
LOC103479245	LOC103475277	ENSPREP00000016313	ENSPREP00000001660	Xenotropic and polytropic retrovirus receptor 1b.	ATP-binding cassette, sub-family G (WHITE), member 1.	0.415
LOC103479245	abcg4	ENSPREP00000016313	ENSPREP00000033911	Xenotropic and polytropic retrovirus receptor 1b.	ATP-binding cassette, sub-family G (WHITE), member 4a.	0.415
LOC103479245	abcg5	ENSPREP00000016313	ENSPREP00000005423	Xenotropic and polytropic retrovirus receptor 1b.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.636
LOC103479245	abcg8	ENSPREP00000016313	ENSPREP00000005357	Xenotropic and polytropic retrovirus receptor 1b.	ATP-binding cassette, sub-family G (WHITE), member 8.	0.629
LOC103479245	hmgcr	ENSPREP00000016313	ENSPREP00000018171	Xenotropic and polytropic retrovirus receptor 1b.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.427
LOC103479245	nr1h3	ENSPREP00000016313	ENSPREP00000006124	Xenotropic and polytropic retrovirus receptor 1b.	Nuclear receptor subfamily 1, group H, member 3.	0.460
LOC103480848	LOC103462236	ENSPREP00000003335	ENSPREP00000000030	ATP-binding cassette, sub-family G (WHITE), member 2a.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.909
LOC103480848	abcg5	ENSPREP00000003335	ENSPREP00000005423	ATP-binding cassette, sub-family G (WHITE), member 2a.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.785
abcf2	abcg5	ENSPREP00000008974	ENSPREP00000005423	ATP-binding cassette, sub-family F (GCN20), member 2b.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.797
abcf2	abcg8	ENSPREP00000008974	ENSPREP00000005357	ATP-binding cassette, sub-family F (GCN20), member 2b.	ATP-binding cassette, sub-family G (WHITE), member 8.	0.477
abcg4	LOC103479245	ENSPREP00000033911	ENSPREP00000016313	ATP-binding cassette, sub-family G (WHITE), member 4a.	Xenotropic and polytropic retrovirus receptor 1b.	0.415
abcg4	abcg5	ENSPREP00000033911	ENSPREP00000005423	ATP-binding cassette, sub-family G (WHITE), member 4a.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.785
abcg4	nr1h3	ENSPREP00000033911	ENSPREP00000006124	ATP-binding cassette, sub-family G (WHITE), member 4a.	Nuclear receptor subfamily 1, group H, member 3.	0.586
abcg5	ENSPREP00000002302	ENSPREP00000005423	ENSPREP00000002302	ATP-binding cassette, sub-family G (WHITE), member 5.	ATP-binding cassette, sub-family G (WHITE), member 2d.	0.785