Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000005436Uncharacterized protein. (398 aa)    
Predicted Functional Partners:
ENSPREP00000029071
Coiled-coil domain containing 9.
    
 0.613
foxn4
Forkhead box N4.
    
 
 0.605
snx25
Sorting nexin 25.
     
 0.603
rbm33
RNA binding motif protein 33a.
    
 0.580
tpgs1
Uncharacterized protein.
      
 0.550
SLC35E2A
Solute carrier family 35 member E2A.
      
 0.521
ENSPREP00000018455
SOGA family member 3b.
      
 0.503
LOC103478331
SOGA family member 3a.
      
 0.503
RAB31
RAB31, member RAS oncogene family.
     
 0.469
rab22a
RAB22A, member RAS oncogene family.
     
 0.469
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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