STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478983SUN domain-containing protein. (1274 aa)    
Predicted Functional Partners:
tapt1
Transmembrane anterior posterior transformation 1b.
    
 
 0.709
LOC103471856
Transmembrane anterior posterior transformation 1a.
    
 
 0.709
rd3
Retinal degeneration 3, GUCY2D regulator.
      
 0.658
mfsd12
Major facilitator superfamily domain containing 12a.
      
 0.587
ankrd40
Ankyrin repeat domain 40.
      
 0.560
pigc
Phosphatidylinositol glycan anchor biosynthesis, class C.
      
 0.555
prrc2c
Proline-rich coiled-coil 2C.
      
 0.548
mysm1
Myb-like, SWIRM and MPN domains 1.
   
  
 0.548
LOC103463777
Transmembrane p24 trafficking protein 5.
   
  
 0.542
garnl3
GTPase activating Rap/RanGAP domain like 3.
      
 0.539
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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