ENSPREP00000005449 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000005449

Uncharacterized protein. (108 aa)

Predicted Functional Partners:

cisd1

0.936

RPL27A

0.741

cpeb2

0.711

surf1

0.685

mrpl24

0.603

rpl28

0.601

gpr75

0.599

cnbp

0.594

mrpl17

0.563

mrps33

0.551

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000005449	RPL27A	ENSPREP00000005449	ENSPREP00000006045	Uncharacterized protein.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.741
ENSPREP00000005449	cisd1	ENSPREP00000005449	ENSPREP00000006145	Uncharacterized protein.	Zgc:110843.	0.936
ENSPREP00000005449	cnbp	ENSPREP00000005449	ENSPREP00000012216	Uncharacterized protein.	CCHC-type zinc finger, nucleic acid binding protein a.	0.594
ENSPREP00000005449	cpeb2	ENSPREP00000005449	ENSPREP00000027218	Uncharacterized protein.	Cytoplasmic polyadenylation element binding protein 2.	0.711
ENSPREP00000005449	gpr75	ENSPREP00000005449	ENSPREP00000033910	Uncharacterized protein.	G protein-coupled receptor 75.	0.599
ENSPREP00000005449	mrpl17	ENSPREP00000005449	ENSPREP00000021683	Uncharacterized protein.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.563
ENSPREP00000005449	mrpl24	ENSPREP00000005449	ENSPREP00000018633	Uncharacterized protein.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.603
ENSPREP00000005449	mrps33	ENSPREP00000005449	ENSPREP00000018901	Uncharacterized protein.	Mitochondrial ribosomal protein S33.	0.551
ENSPREP00000005449	rpl28	ENSPREP00000005449	ENSPREP00000002767	Uncharacterized protein.	Ribosomal protein L28.	0.601
ENSPREP00000005449	surf1	ENSPREP00000005449	ENSPREP00000032407	Uncharacterized protein.	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	0.685
RPL27A	ENSPREP00000005449	ENSPREP00000006045	ENSPREP00000005449	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Uncharacterized protein.	0.741
RPL27A	cnbp	ENSPREP00000006045	ENSPREP00000012216	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	CCHC-type zinc finger, nucleic acid binding protein a.	0.447
RPL27A	mrpl17	ENSPREP00000006045	ENSPREP00000021683	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.949
RPL27A	mrpl24	ENSPREP00000006045	ENSPREP00000018633	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.900
RPL27A	mrps33	ENSPREP00000006045	ENSPREP00000018901	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Mitochondrial ribosomal protein S33.	0.412
RPL27A	rpl28	ENSPREP00000006045	ENSPREP00000002767	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L28.	0.999
cisd1	ENSPREP00000005449	ENSPREP00000006145	ENSPREP00000005449	Zgc:110843.	Uncharacterized protein.	0.936
cnbp	ENSPREP00000005449	ENSPREP00000012216	ENSPREP00000005449	CCHC-type zinc finger, nucleic acid binding protein a.	Uncharacterized protein.	0.594
cnbp	RPL27A	ENSPREP00000012216	ENSPREP00000006045	CCHC-type zinc finger, nucleic acid binding protein a.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.447
cnbp	rpl28	ENSPREP00000012216	ENSPREP00000002767	CCHC-type zinc finger, nucleic acid binding protein a.	Ribosomal protein L28.	0.444