STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttc1Tetratricopeptide repeat domain 1. (290 aa)    
Predicted Functional Partners:
rnf41
Ring finger protein 41.
    
   0.915
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 
 0.800
LOC103464667
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.800
acy1
Aminoacylase 1.
    
   0.789
LOC103468029
MSP domain-containing protein.
    
 
 0.687
Tal1
BHLH domain-containing protein.
    
   0.621
LOC103479412
T-cell acute lymphocytic leukemia 1.
    
   0.621
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
      
 0.601
spsb4
SplA/ryanodine receptor domain and SOCS box containing 4a.
    
   0.542
LOC103479318
SplA/ryanodine receptor domain and SOCS box containing 4a.
    
   0.542
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.