acsf2 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

acsf2

Uncharacterized protein. (621 aa)

Predicted Functional Partners:

aasdh

0.717

sod2

0.705

mrpl3

0.669

mrpl13

0.667

mrpl24

0.663

mrpl11

0.660

Mrpl21

0.660

mrpl15

0.659

mrpl17

0.658

mrpl46

0.654

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mrpl21	acsf2	ENSPREP00000032189	ENSPREP00000005473	Mitochondrial ribosomal protein L21.	Uncharacterized protein.	0.660
Mrpl21	mrpl11	ENSPREP00000032189	ENSPREP00000013197	Mitochondrial ribosomal protein L21.	Mitochondrial ribosomal protein L11.	0.986
Mrpl21	mrpl13	ENSPREP00000032189	ENSPREP00000014020	Mitochondrial ribosomal protein L21.	Mitochondrial ribosomal protein L13.	0.990
Mrpl21	mrpl15	ENSPREP00000032189	ENSPREP00000009782	Mitochondrial ribosomal protein L21.	Mitochondrial ribosomal protein L15.	0.990
Mrpl21	mrpl17	ENSPREP00000032189	ENSPREP00000021683	Mitochondrial ribosomal protein L21.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.995
Mrpl21	mrpl24	ENSPREP00000032189	ENSPREP00000018633	Mitochondrial ribosomal protein L21.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.979
Mrpl21	mrpl3	ENSPREP00000032189	ENSPREP00000005675	Mitochondrial ribosomal protein L21.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.994
Mrpl21	mrpl46	ENSPREP00000032189	ENSPREP00000007262	Mitochondrial ribosomal protein L21.	Mitochondrial ribosomal protein L46.	0.988
Mrpl21	sod2	ENSPREP00000032189	ENSPREP00000008085	Mitochondrial ribosomal protein L21.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.780
aasdh	acsf2	ENSPREP00000029752	ENSPREP00000005473	Aminoadipate-semialdehyde dehydrogenase.	Uncharacterized protein.	0.717
aasdh	sod2	ENSPREP00000029752	ENSPREP00000008085	Aminoadipate-semialdehyde dehydrogenase.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.415
acsf2	Mrpl21	ENSPREP00000005473	ENSPREP00000032189	Uncharacterized protein.	Mitochondrial ribosomal protein L21.	0.660
acsf2	aasdh	ENSPREP00000005473	ENSPREP00000029752	Uncharacterized protein.	Aminoadipate-semialdehyde dehydrogenase.	0.717
acsf2	mrpl11	ENSPREP00000005473	ENSPREP00000013197	Uncharacterized protein.	Mitochondrial ribosomal protein L11.	0.660
acsf2	mrpl13	ENSPREP00000005473	ENSPREP00000014020	Uncharacterized protein.	Mitochondrial ribosomal protein L13.	0.667
acsf2	mrpl15	ENSPREP00000005473	ENSPREP00000009782	Uncharacterized protein.	Mitochondrial ribosomal protein L15.	0.659
acsf2	mrpl17	ENSPREP00000005473	ENSPREP00000021683	Uncharacterized protein.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.658
acsf2	mrpl24	ENSPREP00000005473	ENSPREP00000018633	Uncharacterized protein.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.663
acsf2	mrpl3	ENSPREP00000005473	ENSPREP00000005675	Uncharacterized protein.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.669
acsf2	mrpl46	ENSPREP00000005473	ENSPREP00000007262	Uncharacterized protein.	Mitochondrial ribosomal protein L46.	0.654