STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tspan13Tetraspanin 13a; Belongs to the tetraspanin (TM4SF) family. (204 aa)    
Predicted Functional Partners:
snx13
Sorting nexin 13.
    
 
 0.920
ankmy2
Ankyrin repeat and MYND domain containing 2a.
      
 0.758
LOC103460608
W2 domain-containing protein.
      
 0.585
LOC103457358
Basic leucine zipper and W2 domains 1a.
      
 0.585
LOC103480677
FERM domain-containing protein.
      
 0.571
ZNF830
Zinc finger protein 830.
      
 0.529
VSIG10
Uncharacterized protein.
    
 
 0.527
ttc17
Tetratricopeptide repeat domain 17.
      
 0.513
hm13
Histocompatibility (minor) 13.
      
 0.502
ENSPREP00000009332
Solute carrier family 30 member 5.
      
 0.480
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.