STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTPRBProtein tyrosine phosphatase receptor type B. (1718 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.913
LOC103472282
Uncharacterized protein.
    
  0.905
PTPRB-2
Protein tyrosine phosphatase receptor type B.
  
  
 
0.903
LOC103476642
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
   
 0.591
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
    
  0.530
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.494
LOC103464537
Macrophage stimulating 1 receptor a.
    
  0.494
mst1r
Macrophage stimulating 1 receptor b.
    
  0.494
LOC103481003
NADPH oxidase organizer 1b.
    
 
 0.477
flt1
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
   
 0.446
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.