STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pik3c3Phosphatidylinositol 3-kinase catalytic subunit type 3. (888 aa)    
Predicted Functional Partners:
pik3r4
Phosphoinositide-3-kinase, regulatory subunit 4.
   
 0.999
becn1
Beclin 1, autophagy related.
    
 0.999
atg14
Autophagy related 14.
    
 0.998
nrbf2
Nuclear receptor binding factor 2b.
    
 0.997
uvrag
UV radiation resistance associated gene.
    
 0.996
cdipt
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
   
 
 0.991
pikfyve
Phosphoinositide kinase, FYVE finger containing.
     
 0.972
LOC103477863
RAB5A, member RAS oncogene family, b.
    
 0.965
rab5c
RAB5C, member RAS oncogene family.
    
 0.965
LOC103481860
RAB5B, member RAS oncogene family.
    
 0.965
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.