STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465734Copine VIII. (568 aa)    
Predicted Functional Partners:
sergef
Secretion regulating guanine nucleotide exchange factor.
   
  
 0.610
ENSPREP00000006071
Fin bud initiation factor b.
      
 0.598
ENSPREP00000011352
Uncharacterized protein.
      
 0.597
ush1c
Usher syndrome 1C.
      
 0.588
rnaseh2b
Ribonuclease H2, subunit B.
   
 
 0.490
znf536
Zinc finger protein 536.
      
 0.474
ENSPREP00000031412
Uncharacterized protein.
      
 0.474
LOC103462262
Anoctamin.
      
 0.460
ano9
Anoctamin.
      
 0.460
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.421
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.