STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478506Si:dkey-238d18.4. (404 aa)    
Predicted Functional Partners:
optn
Optineurin.
   
 0.749
RAB7A
RAB7A, member RAS oncogene family.
    
 0.664
LOC103465062
RAB7a, member RAS oncogene family.
    
 0.664
RAB9A
RAB9A, member RAS oncogene family.
   
 0.594
ENSPREP00000010233
RAB9B, member RAS oncogene family.
   
 0.594
armc5
Armadillo repeat containing 5.
   
 0.594
ENSPREP00000018481
Uncharacterized protein.
   
 0.594
gabarapl2
GABA(A) receptor-associated protein like 2.
   
 0.538
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.538
gabarap
GABA(A) receptor-associated protein b.
   
 0.538
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.