lyrm7 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

lyrm7

LYR motif containing 7; Belongs to the complex I LYR family. (105 aa)

Predicted Functional Partners:

UQCRFS1

0.982

LOC103462283

0.982

ndufab1

0.907

ENSPREP00000015043

0.848

nfs1

0.809

ENSPREP00000017636

0.774

iscu

0.774

fxn

0.760

lyrm1

0.703

LOC103466780

0.680

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000015043	ENSPREP00000017636	ENSPREP00000015043	ENSPREP00000017636	Uncharacterized protein; Belongs to the complex I LYR family.	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.965
ENSPREP00000015043	LOC103462283	ENSPREP00000015043	ENSPREP00000002747	Uncharacterized protein; Belongs to the complex I LYR family.	Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.	0.743
ENSPREP00000015043	LOC103466780	ENSPREP00000015043	ENSPREP00000029939	Uncharacterized protein; Belongs to the complex I LYR family.	LYR motif containing 5b; Belongs to the complex I LYR family.	0.694
ENSPREP00000015043	UQCRFS1	ENSPREP00000015043	ENSPREP00000000731	Uncharacterized protein; Belongs to the complex I LYR family.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.743
ENSPREP00000015043	fxn	ENSPREP00000015043	ENSPREP00000018219	Uncharacterized protein; Belongs to the complex I LYR family.	Frataxin.	0.996
ENSPREP00000015043	iscu	ENSPREP00000015043	ENSPREP00000032616	Uncharacterized protein; Belongs to the complex I LYR family.	Iron-sulfur cluster assembly enzyme; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.965
ENSPREP00000015043	lyrm1	ENSPREP00000015043	ENSPREP00000025675	Uncharacterized protein; Belongs to the complex I LYR family.	LYR motif containing 1; Belongs to the complex I LYR family.	0.724
ENSPREP00000015043	lyrm7	ENSPREP00000015043	ENSPREP00000005541	Uncharacterized protein; Belongs to the complex I LYR family.	LYR motif containing 7; Belongs to the complex I LYR family.	0.848
ENSPREP00000015043	ndufab1	ENSPREP00000015043	ENSPREP00000028744	Uncharacterized protein; Belongs to the complex I LYR family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.987
ENSPREP00000015043	nfs1	ENSPREP00000015043	ENSPREP00000021841	Uncharacterized protein; Belongs to the complex I LYR family.	NFS1 cysteine desulfurase.	0.999
ENSPREP00000017636	ENSPREP00000015043	ENSPREP00000017636	ENSPREP00000015043	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Uncharacterized protein; Belongs to the complex I LYR family.	0.965
ENSPREP00000017636	LOC103462283	ENSPREP00000017636	ENSPREP00000002747	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.	0.675
ENSPREP00000017636	UQCRFS1	ENSPREP00000017636	ENSPREP00000000731	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.675
ENSPREP00000017636	fxn	ENSPREP00000017636	ENSPREP00000018219	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Frataxin.	0.969
ENSPREP00000017636	lyrm7	ENSPREP00000017636	ENSPREP00000005541	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	LYR motif containing 7; Belongs to the complex I LYR family.	0.774
ENSPREP00000017636	ndufab1	ENSPREP00000017636	ENSPREP00000028744	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.530
ENSPREP00000017636	nfs1	ENSPREP00000017636	ENSPREP00000021841	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	NFS1 cysteine desulfurase.	0.996
LOC103462283	ENSPREP00000015043	ENSPREP00000002747	ENSPREP00000015043	Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.	Uncharacterized protein; Belongs to the complex I LYR family.	0.743
LOC103462283	ENSPREP00000017636	ENSPREP00000002747	ENSPREP00000017636	Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.675
LOC103462283	UQCRFS1	ENSPREP00000002747	ENSPREP00000000731	Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.901