STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prelpProline/arginine-rich end leucine-rich repeat protein. (385 aa)    
Predicted Functional Partners:
lrr1
Zgc:77287.
  
   
0.787
lum
Lumican.
   
 
 0.714
acan
Aggrecan b.
    
 0.700
ENSPREP00000026524
Uncharacterized protein.
    
 0.700
bgn
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
  
 
0.689
ogn
Osteoglycin, paralog a.
   
 
 0.678
ENSPREP00000023466
Uncharacterized protein.
   
 
 0.678
aspn
Asporin.
  
 
0.677
LOC103464866
Fibromodulin a.
   
 
  0.643
LOC103467543
Fibromodulin b.
   
 
  0.643
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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