fam160a2 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fam160a2

Family with sequence similarity 160 member A2. (1142 aa)

Predicted Functional Partners:

aktip

0.895

hook2

0.776

hook1

0.763

HOOK3

0.763

tnfsf13b

0.730

dctn3

0.503

LOC103471097

0.495

LOC103458439

0.462

brinp1

0.409

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HOOK3	aktip	ENSPREP00000010092	ENSPREP00000009456	Hook microtubule tethering protein 3.	Akt interacting protein.	0.939
HOOK3	fam160a2	ENSPREP00000010092	ENSPREP00000005609	Hook microtubule tethering protein 3.	Family with sequence similarity 160 member A2.	0.763
HOOK3	hook2	ENSPREP00000010092	ENSPREP00000021239	Hook microtubule tethering protein 3.	Hook microtubule-tethering protein 2.	0.651
HOOK3	tnfsf13b	ENSPREP00000010092	ENSPREP00000033767	Hook microtubule tethering protein 3.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.623
LOC103458439	fam160a2	ENSPREP00000016104	ENSPREP00000005609	Receptor expression-enhancing protein.	Family with sequence similarity 160 member A2.	0.462
LOC103471097	aktip	ENSPREP00000007317	ENSPREP00000009456	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Akt interacting protein.	0.765
LOC103471097	fam160a2	ENSPREP00000007317	ENSPREP00000005609	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Family with sequence similarity 160 member A2.	0.495
LOC103471097	tnfsf13b	ENSPREP00000007317	ENSPREP00000033767	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.900
aktip	HOOK3	ENSPREP00000009456	ENSPREP00000010092	Akt interacting protein.	Hook microtubule tethering protein 3.	0.939
aktip	LOC103471097	ENSPREP00000009456	ENSPREP00000007317	Akt interacting protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.765
aktip	fam160a2	ENSPREP00000009456	ENSPREP00000005609	Akt interacting protein.	Family with sequence similarity 160 member A2.	0.895
aktip	hook1	ENSPREP00000009456	ENSPREP00000003890	Akt interacting protein.	Hook microtubule-tethering protein 1.	0.939
aktip	hook2	ENSPREP00000009456	ENSPREP00000021239	Akt interacting protein.	Hook microtubule-tethering protein 2.	0.961
aktip	tnfsf13b	ENSPREP00000009456	ENSPREP00000033767	Akt interacting protein.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.940
brinp1	fam160a2	ENSPREP00000024289	ENSPREP00000005609	Bone morphogenetic protein/retinoic acid inducible neural-specific 1.	Family with sequence similarity 160 member A2.	0.409
dctn3	fam160a2	ENSPREP00000028588	ENSPREP00000005609	Dynactin 3 (p22).	Family with sequence similarity 160 member A2.	0.503
fam160a2	HOOK3	ENSPREP00000005609	ENSPREP00000010092	Family with sequence similarity 160 member A2.	Hook microtubule tethering protein 3.	0.763
fam160a2	LOC103458439	ENSPREP00000005609	ENSPREP00000016104	Family with sequence similarity 160 member A2.	Receptor expression-enhancing protein.	0.462
fam160a2	LOC103471097	ENSPREP00000005609	ENSPREP00000007317	Family with sequence similarity 160 member A2.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.495
fam160a2	aktip	ENSPREP00000005609	ENSPREP00000009456	Family with sequence similarity 160 member A2.	Akt interacting protein.	0.895